Abstract: With China entering a new stage of development, the original ecological governance thinking, methods and systems can no longer meet the needs of the current ecological governance, and the deep-seated contradictions of governance are highlighted. Therefore, it is necessary to change the original governance mode and construct four beams and eight pillars of ecosystem governance from the perspective of thinking, method and system. In terms of governance thinking, systematic thinking should be established on the basis of holistic thinking, collaborative thinking and bottom line thinking; in terms of governance methods, systematic methods should be learned from the perspective of overall planning, unity of opposites and development; in terms of governance system, systematic systems should be established with the focus on ecological boundary delimitation system, economic ecological transformation system and long-term supervision system, so as to promote China’s socialism ecological civilization to a new level.