Abstract: The deficiency of existed scientific research system is gradually exposed. To adapt to the new trend, the scientific research systems in universities need to reform and innovate. In these 10 years, some key universities in our country have built a group of professional academies. It did important explorations on the reform of the scientific research system. This paper reviews the professional academies' development in our country and analyzes the reason about the professional academies. Finally, the paper puts forward countermeasures and suggestions on the problem of establishing the professional university academy.